Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0803746.4a.6a with 2 members (coiled-coil domain-containing protein 22)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Laurasiatheria / Carnivora /

Caniformia /

Completeness score: 0.33

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This HOG has 26 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0803746.3a	156	86	coiled-coil domain-containing protein 22
2	HOG:E0803746.4a	130	140	coiled-coil domain-containing protein 22
3	HOG:E0803746	68	294	coiled-coil domain-containing protein 22
4	HOG:E0815826	30	67	coiled-coil domain-containing protein 22
5	HOG:E0803746.2a	26	15	coiled-coil domain-containing protein 22
6	HOG:E0145634	25	21	Coiled-coil domain-containing protein 22 homolog
7	HOG:E0803746.4a.6b	21	67	coiled-coil domain-containing protein 22
8	HOG:E0803746.4a.5b	4	2	coiled-coil domain-containing protein 22
9	HOG:E0803746.4a.5a	4	2	coiled-coil domain-containing protein 22
10	HOG:E0815826.5a	2	2	coiled-coil domain-containing protein 22
11	HOG:E0803746.4a.4b	2	1	coiled-coil domain-containing protein 22
12	HOG:E0803746.4a.4a	2	1	coiled-coil domain-containing protein 22
13	HOG:E0803746.3a.3b	2	1	coiled-coil domain-containing protein 22
14	HOG:E0803746.3a.3a	2	1	coiled-coil domain-containing protein 22
15	HOG:E0803746.3a.2b	2	1	coiled-coil domain-containing protein 22
16	HOG:E0803746.3a.2a	2	1	coiled-coil domain-containing protein 22
17	HOG:E0803746.2b	2	1	coiled-coil domain-containing protein 22
18	HOG:E0803746.2a.1b	2	1	coiled-coil domain-containing protein 22
19	HOG:E0803746.2a.1a	2	1	coiled-coil domain-containing protein 22
20	HOG:E0815826.6a	1	2	coiled-coil domain-containing protein 22
21	HOG:E0815826.4b	1	2	coiled-coil domain-containing protein 22
22	HOG:E0815826.2a	1	1	coiled-coil domain-containing protein 22
23	HOG:E0803746.4a.6b.1b	1	1	coiled-coil domain-containing protein 22
24	HOG:E0803746.4a.6b.1a	1	1	coiled-coil domain-containing protein 22
25	HOG:E0803746.3b	1	1	coiled-coil domain-containing protein 22

Showing 1 to 25 of 26 rows rows per page